User guide¶

Run interoperability experiments and inspect their results.

• First experiment: a small, verified PRIDE → Sage run.
• Compare search engines: reuse its inputs with Comet and MS Amanda.
• Local interface: select experiments, monitor runs and inspect results.
• Configure experiments: reuse profiles and select combinations.
• Components and scope: parameters and evaluation limits.
• CLI and downloads: commands, cache inspection and cleanup.